Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB83715.1PFAM: Cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450. (382 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.913
AEB86223.1
KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Cytochrome b/b6, N-terminal; Oxidoreductase FAD/NAD(P)-binding.
  
 0.756
AEB85830.1
Ferredoxin--NAD(+) reductase; KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin.
  
 0.732
AEB83716.1
UbiD family decarboxylase; KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; Belongs to the UbiD family.
       0.728
AEB86624.1
KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
   
 
 0.700
AEB83714.1
Beta-Casp domain protein; KEGG: dia:Dtpsy_2580 beta-lactamase domain protein; PFAM: Beta-Casp domain; RNA-metabolising metallo-beta-lactamase; Beta-lactamase-like; SMART: Beta-lactamase-like.
     
 0.654
AEB83718.1
DGC domain protein; PFAM: DGC; KEGG: ajs:Ajs_3223 hypothetical protein.
 
     0.651
AEB86590.1
2,4-dichlorophenol 6-monooxygenase; KEGG: reu:Reut_B4679 monooxygenase, FAD-binding; PFAM: Monooxygenase, FAD-binding.
 
 
 0.646
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.646
AEB84766.1
KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin.
  
 0.631
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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