Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB83738.1KEGG: dia:Dtpsy_1028 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; Belongs to the UPF0312 family. (191 aa)    
Predicted Functional Partners:
AEB83737.1
KEGG: dia:Dtpsy_1027 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; Belongs to the UPF0312 family.
 
   
 0.924
AEB83736.1
PFAM: Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_1026 cytochrome b561.
 
  
 0.854
AEB83735.1
KEGG: ajs:Ajs_1106 hypothetical protein.
  
    0.449
AEB83374.1
Cytochrome b561; Manually curated; KEGG: dac:Daci_2711 cytochrome b561.
 
  
 0.407
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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