STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83783.1PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: vei:Veis_2283 signal transduction histidine kinase, LytS. (351 aa)    
Predicted Functional Partners:
AEB83782.1
KEGG: dia:Dtpsy_1069 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain.
 
 
 0.983
AEB85951.1
Two component transcriptional regulator, LytTR family; KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain.
 
 
 0.909
AEB83784.1
KEGG: vei:Veis_2284 hypothetical protein.
     
 0.832
AEB83785.1
KEGG: xtr:100495621 UPF0065 protein in clcB-clcD intergenic region-like.
 
     0.809
AEB84168.1
TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein.
  
 
 0.540
AEB84288.1
TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: rpf:Rpic12D_0672 hypothetical protein.
  
 
 0.540
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.521
AEB83781.1
PFAM: Major facilitator superfamily MFS-1; KEGG: bpe:BP2600 hypothetical protein.
     
 0.462
AEB85474.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.425
AEB83780.1
PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1.
     
 0.424
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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