Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83825.1KEGG: dia:Dtpsy_1104 hypothetical protein. (321 aa)    
Predicted Functional Partners:
AEB83826.1
KEGG: dia:Dtpsy_1105 polysaccharide deacetylase; manually curated; PFAM: Polysaccharide deacetylase.
 
   
 0.936
AEB83827.1
PFAM: Fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase.
 
     0.901
AEB84717.1
KEGG: dia:Dtpsy_1716 hypothetical protein.
  
 
 0.834
AEB84715.1
Hypothetical protein; KEGG: dia:Dtpsy_1714 putative transcriptional regulator, AsnC family.
  
  
 0.755
AEB82557.1
KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit.
  
 
 0.748
AEB84714.1
KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator.
  
  
 0.687
AEB83772.1
KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal.
   
  
 0.663
AEB83828.1
Protein of unknown function DUF540; PFAM: Uncharacterised protein family CysZ; KEGG: dia:Dtpsy_1107 putative transmembrane protein.
 
     0.644
AEB83510.1
PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_0985 cytochrome c class I.
  
  
 0.636
AEB83771.1
Nitrous oxide expression regulator, NosR; KEGG: dia:Dtpsy_1059 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding.
  
  
 0.604
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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