Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB83843.1PFAM: Protein of unknown function DUF3348; KEGG: vap:Vapar_3241 hypothetical protein. (223 aa)    
Predicted Functional Partners:
AEB83844.1
PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Domain of unknown function DUF802; KEGG: vap:Vapar_3240 protein of unknown function DUF802.
 
     0.949
AEB86615.1
PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_3162 histone family protein DNA-binding protein.
  
     0.727
AEB85637.1
KEGG: dia:Dtpsy_2126 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein.
  
     0.703
AEB86160.1
KEGG: dia:Dtpsy_2944 histone protein.
  
     0.541
AEB84931.1
PFAM: Protein of unknown function DUF2242; KEGG: dia:Dtpsy_2310 putative lipoprotein.
  
     0.506
AEB84471.1
PFAM: Protein of unknown function DUF3016; KEGG: dac:Daci_0667 hypothetical protein.
  
     0.502
AEB87006.1
PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor).
  
     0.495
AEB83841.1
KEGG: rle:pRL110581 putative transposase-related protein.
       0.450
AEB83842.1
PFAM: Transposase, IS4-like; KEGG: nwi:Nwi_1015 transposase, IS4.
       0.450
AEB83238.1
KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.442
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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