Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AEB83861.1PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_4464 TetR family transcriptional regulator. (205 aa)    
Predicted Functional Partners:
AEB86582.1
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_0033 TetR family transcriptional regulator.
  
     0.627
AEB83863.1
PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase.
 
   
 0.488
AEB83862.1
Citryl-CoA lyase; KEGG: bbr:BB0589 hypothetical protein; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
     
 0.446
AEB83869.1
PFAM: Nitroreductase-like; KEGG: bbr:BB0596 nitroreductase family protein.
 
   
 0.416
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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