Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83862.1Citryl-CoA lyase; KEGG: bbr:BB0589 hypothetical protein; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family. (294 aa)    
Predicted Functional Partners:
AEB83863.1
PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase.
 
  
 0.794
AEB84670.1
PFAM: Class II aldolase/adducin, N-terminal; KEGG: vap:Vapar_5143 putative aldolase.
   
  
 0.717
AEB83864.1
KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.
  
  
 0.705
AEB83865.1
Formyl-CoA transferase; KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
    0.550
AEB83866.1
Alpha-methylacyl-CoA racemase; KEGG: bbr:BB0593 CaiB/BaiF family protein; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
    0.550
AEB83870.1
PFAM: Crotonase, core; KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein.
     
 0.477
AEB83867.1
KEGG: bbr:BB0594 hypothetical protein.
       0.471
AEB83868.1
KEGG: bbr:BB0595 hypothetical protein.
       0.471
AEB83869.1
PFAM: Nitroreductase-like; KEGG: bbr:BB0596 nitroreductase family protein.
       0.471
AEB83861.1
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_4464 TetR family transcriptional regulator.
     
 0.446
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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