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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83879.1PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (318 aa)    
Predicted Functional Partners:
AEB83878.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B2639 hypothetical protein.
       0.548
AEB86829.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_4656 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.504
AEB86749.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0328 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.487
AEB83880.1
KEGG: bbr:BB0605 hypothetical protein.
       0.463
AEB86269.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3911 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.458
AEB83753.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.457
AEB82547.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.451
AEB83746.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1039 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.448
AEB82531.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.439
AEB83877.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0604 short chain dehydrogenase.
 
   
 0.435
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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