Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB83929.1MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bpa:BPP0622 hypothetical protein. (468 aa)    
Predicted Functional Partners:
AEB84232.1
KEGG: bbr:BB4339 hypothetical protein.
  
     0.725
AEB83928.1
KEGG: bbr:BB0625 hypothetical protein.
       0.713
AEB83930.1
KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain.
  
  
 0.599
AEB86263.1
KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; PFAM: Isocitrate lyase/phosphorylmutase.
 
  
 0.579
AEB83471.1
PFAM: Isocitrate lyase/phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase.
 
  
 0.575
AEB84472.1
Methylisocitrate lyase; KEGG: dac:Daci_3579 PEP phosphonomutase; PFAM: Isocitrate lyase/phosphorylmutase.
 
  
 0.571
AEB83917.1
KEGG: bbr:BB0622 hypothetical protein.
 
  
 0.533
AEB83925.1
L-iditol 2-dehydrogenase; KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like.
 
     0.524
AEB82590.1
KEGG: dia:Dtpsy_0137 hypothetical protein.
 
  
 0.513
AEB85803.1
KEGG: vap:Vapar_0122 hypothetical protein.
 
  
 0.511
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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