Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB83934.1PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin. (351 aa)    
Predicted Functional Partners:
AEB86111.1
NlpBDapX family lipoprotein; PFAM: Lipoprotein, NlpB; KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein.
  
   
 0.716
AEB83933.1
Protein of unknown function DUF894 DitE; PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE.
     
 0.647
AEB84508.1
PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein.
  
     0.639
AEB83935.1
KEGG: reu:Reut_B3884 hypothetical protein.
       0.586
AEB83236.1
PFAM: VacJ-like lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein.
 
 
 
 0.575
AEB85617.1
KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin.
  
     0.555
AEB82837.1
KEGG: ajs:Ajs_3893 hypothetical protein.
  
     0.551
AEB83179.1
Porin; KEGG: aav:Aave_0932 porin.
  
  
 
0.536
AEB86592.1
Porin; KEGG: vap:Vapar_4252 porin.
  
  
 
0.534
AEB86449.1
Porin; KEGG: ajs:Ajs_3751 porin.
  
  
 
0.531
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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