Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83959.1KEGG: pap:PSPA7_3701 putative lipoprotein. (106 aa)    
Predicted Functional Partners:
AEB83955.1
Conjugation TrbI family protein; PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pap:PSPA7_3697 conjugation TrbI family protein.
   
 
 0.877
AEB83961.1
KEGG: pap:PSPA7_3703 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SMART: ATPase, AAA+ type, core.
   
 
 0.829
AEB83958.1
KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6.
     
 0.806
AEB83956.1
KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX.
     
 0.800
AEB83957.1
KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF.
     
 0.792
AEB83954.1
PFAM: Protein of unknown function DUF2274; KEGG: pap:PSPA7_3696 conjugal transfer protein.
       0.783
AEB83960.1
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ.
       0.783
AEB83964.1
KEGG: pap:PSPA7_3706 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E.
     
 0.768
AEB83962.1
KEGG: pap:PSPA7_3704 conjugal transfer protein.
     
 0.766
AEB83963.1
PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC.
     
 0.766
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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