STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83968.1KEGG: bpt:Bpet2202 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
AEB83967.1
KEGG: pap:PSPA7_3722 putative lipoprotein.
       0.773
AEB83954.1
PFAM: Protein of unknown function DUF2274; KEGG: pap:PSPA7_3696 conjugal transfer protein.
 
     0.736
AEB82953.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.730
AEB86414.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3510 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.705
AEB84638.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.668
AEB84545.1
PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein.
  
     0.660
AEB85315.1
PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein.
  
     0.657
AEB83985.1
PFAM: Protein of unknown function DUF2285; KEGG: dac:Daci_0459 hypothetical protein.
  
     0.654
AEB83632.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.630
AEB84360.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bvi:Bcep1808_7210 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.621
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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