close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83971.1PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component. (371 aa)    
Predicted Functional Partners:
AEB83973.1
PFAM: ABC transporter-like; KEGG: pag:PLES_25911 ATP-binding protein; SMART: ATPase, AAA+ type, core.
  
 0.981
AEB83974.1
PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein.
 
  
 0.955
AEB84114.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: tmz:Tmz1t_1019 ABC transporter related; SMART: ATPase, AAA+ type, core.
  
 0.914
AEB83972.1
PFAM: ABC-2 type transporter; KEGG: bpa:BPP1316 hypothetical protein.
 
  
 
0.884
AEB84113.1
PFAM: Secretion protein HlyD; KEGG: tmz:Tmz1t_1020 hypothetical protein.
 
  
 0.809
AEB83970.1
KEGG: bbr:BB2379 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
     
 0.771
AEB83969.1
PFAM: Monooxygenase, FAD-binding; KEGG: ami:Amir_4339 monooxygenase FAD-binding.
       0.751
AEB86723.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; ABC-2 type transporter; KEGG: ajs:Ajs_2361 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 
0.643
AEB83975.1
Transcriptional regulator TetR; PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ppg:PputGB1_3284 TetR family transcriptional regulator.
 
     0.630
nodI
Fe(3+)-transporting ATPase; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
  
 0.609
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.