Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB83976.1KEGG: sml:Smlt1841 hypothetical protein. (673 aa)    
Predicted Functional Partners:
AEB83975.1
Transcriptional regulator TetR; PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ppg:PputGB1_3284 TetR family transcriptional regulator.
     
 0.778
AEB84650.1
PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: dac:Daci_2483 hypothetical protein.
  
     0.750
AEB84602.1
KEGG: dia:Dtpsy_2274 hypothetical protein.
  
     0.646
AEB83974.1
PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein.
  
  
 0.547
AEB83971.1
PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component.
     
 0.537
AEB83972.1
PFAM: ABC-2 type transporter; KEGG: bpa:BPP1316 hypothetical protein.
     
 0.537
AEB83973.1
PFAM: ABC transporter-like; KEGG: pag:PLES_25911 ATP-binding protein; SMART: ATPase, AAA+ type, core.
       0.534
AEB83970.1
KEGG: bbr:BB2379 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
       0.524
AEB83969.1
PFAM: Monooxygenase, FAD-binding; KEGG: ami:Amir_4339 monooxygenase FAD-binding.
       0.520
AEB85071.1
ABC-1 domain-containing protein; PFAM: ABC-1; KEGG: ajs:Ajs_2681 2-octaprenylphenol hydroxylase.
 
 
   0.419
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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