STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB83988.1Protein of unknown function DUF736; KEGG: ajs:Ajs_2644 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF736. (117 aa)    
Predicted Functional Partners:
AEB83960.1
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ.
 
     0.778
AEB83962.1
KEGG: pap:PSPA7_3704 conjugal transfer protein.
 
     0.778
AEB83963.1
PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC.
 
     0.777
AEB83957.1
KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF.
 
     0.776
AEB83956.1
KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX.
 
     0.774
AEB83958.1
KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6.
 
     0.774
AEB83966.1
TRAG family protein; PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG.
 
     0.774
AEB83965.1
PFAM: CopG-like DNA-binding; KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein.
 
     0.771
AEB83961.1
KEGG: pap:PSPA7_3703 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SMART: ATPase, AAA+ type, core.
 
     0.767
AEB83979.1
PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase.
 
     0.766
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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