STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84019.1KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase. (453 aa)    
Predicted Functional Partners:
AEB83612.1
PFAM: Amidase; KEGG: dac:Daci_2827 amidase.
    
 0.906
AEB84022.1
KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase.
 
   
 0.735
AEB84020.1
Methylcrotonoyl-CoA carboxylase; KEGG: pol:Bpro_5271 carboxyl transferase; PFAM: Carboxyl transferase.
       0.723
AEB84021.1
Methylcrotonoyl-CoA carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal.
       0.709
AEB84023.1
KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
 
   
 0.705
AEB84018.1
PFAM: Crotonase, core; KEGG: mlo:mll1009 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.577
AEB82922.1
KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
 
    0.490
AEB86954.1
Acetate--CoA ligase; KEGG: gka:GK2759 acetyl-CoA synthetase (acetate-CoA ligase); PFAM: AMP-dependent synthetase/ligase.
 
   
 0.488
AEB86576.1
KEGG: dac:Daci_0027 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase.
 
    0.472
AEB84017.1
PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_4450 extracellular ligand-binding receptor.
  
    0.451
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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