STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84024.1PFAM: Transcription regulator YsiA, C-terminal; KEGG: azc:AZC_4590 transcriptional regulator. (197 aa)    
Predicted Functional Partners:
AEB84880.1
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bbr:BB4302 TetR family transcriptional regulator.
  
     0.746
AEB84025.1
PFAM: Crotonase, core; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase.
     
 0.493
AEB82922.1
KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
 
   
 0.461
AEB86582.1
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_0033 TetR family transcriptional regulator.
  
     0.461
AEB84215.1
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_5293 TetR family transcriptional regulator.
  
     0.423
ttcA
tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
  
   0.419
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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