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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84036.1HemY domain protein; PFAM: HemY, N-terminal; KEGG: ajs:Ajs_2893 HemY domain-containing protein. (429 aa)    
Predicted Functional Partners:
AEB84037.1
PFAM: HemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX.
  
 0.983
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.831
AEB84038.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
   
 0.808
AEB84503.1
PFAM: Protein of unknown function DUF349; KEGG: dia:Dtpsy_2041 hypothetical protein.
 
   
 0.778
AEB82894.1
KEGG: ajs:Ajs_0447 hypothetical protein.
 
     0.769
AEB83358.1
PFAM: Outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 putative lipoprotein.
 
     0.767
AEB83329.1
KEGG: dia:Dtpsy_0798 hypothetical protein.
  
     0.763
AEB85016.1
KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein.
  
     0.761
AEB86142.1
Ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R.
  
    0.755
AEB82893.1
PFAM: Protein of unknown function DUF3567; KEGG: ajs:Ajs_0446 hypothetical protein.
  
     0.753
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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