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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84068.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
AEB84067.1
KEGG: ajs:Ajs_2874 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557.
       0.773
AEB85355.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bpt:Bpet1402 transcriptional regulator CatR; Belongs to the LysR transcriptional regulatory family.
  
     0.762
AEB84360.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bvi:Bcep1808_7210 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.735
AEB83142.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_4993 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.727
AEB82452.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.720
AEB84454.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4525 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.716
AEB86935.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.716
AEB84638.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.715
AEB86269.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3911 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.687
AEB83391.1
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.686
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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