Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84101.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2361 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (318 aa)    
Predicted Functional Partners:
AEB83415.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0990 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.689
AEB85957.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A3085 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.668
AEB86935.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.662
AEB82521.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.650
AEB82953.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.646
AEB86817.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2148 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.642
AEB84664.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.639
AEB83913.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.635
AEB84638.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.629
AEB86896.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_4070 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.628
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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