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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84112.1KEGG: tmz:Tmz1t_1021 hypothetical protein. (139 aa)    
Predicted Functional Partners:
AEB84121.1
PFAM: Protein of unknown function DUF2219; KEGG: rme:Rmet_1261 hypothetical protein.
 
     0.882
AEB84122.1
KEGG: tmz:Tmz1t_1007 hypothetical protein.
 
     0.882
AEB84111.1
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tmz:Tmz1t_1022 transcriptional regulator, TetR family.
 
     0.808
AEB84117.1
KEGG: rme:Rmet_1267 RND efflux system outer membrane lipoprotein NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
 
     0.772
AEB84113.1
PFAM: Secretion protein HlyD; KEGG: tmz:Tmz1t_1020 hypothetical protein.
 
     0.766
AEB84114.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: tmz:Tmz1t_1019 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
     0.740
AEB84116.1
PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1017 ABC-2 type transporter.
 
     0.739
AEB84115.1
PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1018 ABC-2 type transporter.
 
     0.732
AEB84120.1
KEGG: rme:Rmet_1265 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG.
 
     0.725
AEB84306.1
KEGG: ppd:Ppro_3848 hypothetical protein.
 
     0.702
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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