STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84125.1Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA. (72 aa)    
Predicted Functional Partners:
AEB84126.1
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tmz:Tmz1t_0999 cobyrinic acid ac-diamide synthase.
 
     0.802
AEB84128.1
Integrating conjugative element, PFGI-1, ParB; KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB.
 
     0.802
AEB84129.1
KEGG: mpt:Mpe_A2335 hypothetical protein.
 
     0.800
AEB84130.1
KEGG: mpt:Mpe_A2336 hypothetical protein.
 
     0.798
AEB85050.1
KEGG: dze:Dd1591_3709 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory.
  
     0.772
AEB84342.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dac:Daci_4139 integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.771
AEB84207.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: mpt:Mpe_A2408 integrase (int); Belongs to the 'phage' integrase family.
 
  
 0.766
AEB82855.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dia:Dtpsy_3164 integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.721
AEB85620.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1604 phage integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.701
AEB83486.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: pol:Bpro_0966 phage integrase; Belongs to the 'phage' integrase family.
 
  
 0.688
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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