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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84161.1KEGG: bvi:Bcep1808_7485 hypothetical protein. (428 aa)    
Predicted Functional Partners:
AEB84162.1
KEGG: mno:Mnod_2227 hypothetical protein.
 
     0.913
AEB84163.1
KEGG: bvi:Bcep1808_7486 hypothetical protein.
 
     0.912
AEB83770.1
TIGRFAM: Parallel beta-helix repeat-2; PFAM: Periplasmic copper-binding; Domain of unknown function DUF1565; KEGG: dia:Dtpsy_1058 periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat.
  
 
 0.803
AEB83766.1
NosL family protein; PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1054 hypothetical protein.
  
 
 0.756
AEB83767.1
NosL family protein; PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1055 NosL family protein.
  
 
 0.756
AEB86723.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; ABC-2 type transporter; KEGG: ajs:Ajs_2361 ABC transporter related; SMART: ATPase, AAA+ type, core.
  
 
 0.755
AEB83772.1
KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal.
  
 
 0.730
nodI
Fe(3+)-transporting ATPase; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
  
 
 0.719
AEB83240.1
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0722 ABC transporter related; SMART: ATPase, AAA+ type, core.
  
 
 0.719
AEB83769.1
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1057 ABC transporter related; SMART: ATPase, AAA+ type, core.
  
 
 0.719
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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