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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84169.1KEGG: tmz:Tmz1t_0963 hypothetical protein; manually curated; TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1. (718 aa)    
Predicted Functional Partners:
AEB84167.1
PFAM: Lytic transglycosylase-like, catalytic; KEGG: mpt:Mpe_A2378 hypothetical protein.
 
   
 0.949
AEB84166.1
TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: ajs:Ajs_2211 putative secreted protein.
 
     0.948
AEB84170.1
TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: mpt:Mpe_A2381 hypothetical protein.
 
     0.948
AEB84168.1
TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein.
 
     0.947
AEB84164.1
TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: tmz:Tmz1t_0968 hypothetical protein.
 
   
 0.944
AEB84187.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein.
 
  
 0.800
AEB84299.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein.
 
  
 0.800
AEB84287.1
PFAM: Lytic transglycosylase-like, catalytic; KEGG: rpf:Rpic12D_0671 lytic transglycosylase catalytic.
 
   
 0.791
AEB84284.1
TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: rpf:Rpic12D_0668 hypothetical protein.
 
   
 0.786
AEB84201.1
KEGG: ajs:Ajs_2175 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal.
 
   
 0.785
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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