Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84173.1PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod. (568 aa)    
Predicted Functional Partners:
AEB84172.1
PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: eba:ebA2417 hypothetical protein.
 
  
 0.989
AEB84174.1
PFAM: Abortive phage infection; KEGG: pph:Ppha_0341 hypothetical protein.
 
   
 0.892
AEB84177.1
Manually curated; PFAM: SNF2-related; Helicase, C-terminal; KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.
 
   
 0.871
AEB84175.1
PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: alv:Alvin_2786 peptidase S8 and S53 subtilisin kexin sedolisin.
     
 0.776
AEB84425.1
KEGG: mca:MCA0277 hypothetical protein.
 
 
 
 0.643
AEB84426.1
PFAM: DNA methylase, adenine-specific; KEGG: xfn:XfasM23_2177 N-6 DNA methylase.
 
   
 0.613
AEB84424.1
KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.
 
   
 0.585
AEB84171.1
KEGG: cli:Clim_0127 hypothetical protein.
       0.579
AEB85127.1
PFAM: DNA methylase, adenine-specific; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit.
 
   
 0.563
AEB84387.1
KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.520
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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