Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB84178.1DNA binding domain protein, excisionase family; KEGG: ajs:Ajs_2531 phage transcriptional regulator, AlpA; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory. (66 aa)    
Predicted Functional Partners:
AEB84177.1
Manually curated; PFAM: SNF2-related; Helicase, C-terminal; KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.
 
     0.678
AEB84172.1
PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: eba:ebA2417 hypothetical protein.
 
     0.508
AEB84176.1
KEGG: alv:Alvin_2785 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
 
     0.506
AEB84173.1
PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod.
 
  
 0.480
AEB84179.1
Protein of unknown function, RAQPRD; KEGG: tmz:Tmz1t_0956 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD.
       0.476
AEB84180.1
Integrating conjugative element protein, PFL_4701 family; TIGRFAM: Protein of unknown function DUF3262; KEGG: ajs:Ajs_2193 hypothetical protein.
       0.476
AEB84174.1
PFAM: Abortive phage infection; KEGG: pph:Ppha_0341 hypothetical protein.
 
   
 0.443
AEB84187.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein.
       0.443
AEB84145.1
KEGG: tmz:Tmz1t_0974 hypothetical protein.
 
     0.441
AEB84181.1
Integrating conjugative element membrane protein, PFL_4702 family; TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: tmz:Tmz1t_0954 hypothetical protein.
       0.438
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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