STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84180.1Integrating conjugative element protein, PFL_4701 family; TIGRFAM: Protein of unknown function DUF3262; KEGG: ajs:Ajs_2193 hypothetical protein. (79 aa)    
Predicted Functional Partners:
AEB84179.1
Protein of unknown function, RAQPRD; KEGG: tmz:Tmz1t_0956 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD.
       0.804
AEB84181.1
Integrating conjugative element membrane protein, PFL_4702 family; TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: tmz:Tmz1t_0954 hypothetical protein.
       0.723
AEB84182.1
Conjugative transfer region protein, TIGR03750 family; TIGRFAM: Protein of unknown function DUF3487; KEGG: ajs:Ajs_2191 hypothetical protein.
       0.694
AEB84183.1
Integrating conjugative element protein, PFL_4703 family; TIGRFAM: Protein of unknown function DUF2895; KEGG: mpt:Mpe_A2390 hypothetical protein.
       0.694
AEB84184.1
TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: ajs:Ajs_2189 hypothetical protein.
       0.694
AEB84185.1
TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: mpt:Mpe_A2392 hypothetical protein.
       0.694
AEB84186.1
TIGRFAM: Conjugative transfer region lipoprotein; KEGG: mpt:Mpe_A2393 hypothetical protein.
       0.694
AEB84187.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein.
       0.693
AEB84188.1
KEGG: tmz:Tmz1t_0947 hypothetical protein.
       0.676
AEB84178.1
DNA binding domain protein, excisionase family; KEGG: ajs:Ajs_2531 phage transcriptional regulator, AlpA; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory.
       0.476
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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