STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84191.1KEGG: app:CAP2UW1_2946 N-6 DNA methylase. (987 aa)    
Predicted Functional Partners:
AEB84425.1
KEGG: mca:MCA0277 hypothetical protein.
  
 
 0.947
AEB84424.1
KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.
  
 
 0.921
AEB84190.1
KEGG: app:CAP2UW1_2945 hypothetical protein.
       0.781
AEB84203.1
PFAM: LysR, substrate-binding; KEGG: mpt:Mpe_A2407 transcriptional regulator.
  
     0.677
AEB85052.1
KEGG: rpf:Rpic12D_4970 ATP-dependent OLD family endonuclease.
  
  
 0.605
AEB84164.1
TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: tmz:Tmz1t_0968 hypothetical protein.
 
   
 0.591
AEB84130.1
KEGG: mpt:Mpe_A2336 hypothetical protein.
  
     0.580
AEB84128.1
Integrating conjugative element, PFGI-1, ParB; KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB.
 
  
 0.556
AEB84261.1
PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein.
 
     0.555
AEB84134.1
PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein.
 
     0.553
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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