STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84202.1Helix-turn-helix domain protein; KEGG: mpt:Mpe_A2406 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3. (99 aa)    
Predicted Functional Partners:
AEB84203.1
PFAM: LysR, substrate-binding; KEGG: mpt:Mpe_A2407 transcriptional regulator.
 
     0.858
AEB86617.1
KEGG: neu:NE1310 HipA protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal.
   
 
 0.714
AEB83488.1
Helix-turn-helix domain protein; Manually curated; PFAM: Helix-turn-helix type 3; KEGG: pde:Pden_0455 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3.
 
     0.693
AEB84341.1
PFAM: LysR, substrate-binding; KEGG: rpf:Rpic12D_0696 transcriptional regulator, LysR family.
 
     0.673
AEB85413.1
Helix-turn-helix domain protein; Manually curated; PFAM: Helix-turn-helix type 3; KEGG: rsl:RPSI07_1481 putative HTH-type transcriptional regulator; SMART: Helix-turn-helix type 3.
 
   
 0.573
AEB84201.1
KEGG: ajs:Ajs_2175 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal.
 
   
 0.401
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.