STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84207.1Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: mpt:Mpe_A2408 integrase (int); Belongs to the 'phage' integrase family. (617 aa)    
Predicted Functional Partners:
AEB86175.1
Integrase; KEGG: pap:PSPA7_5324 integrase.
  
     0.773
AEB84125.1
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA.
 
  
 0.766
AEB85417.1
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: ppg:PputGB1_4755 phage transcriptional regulator, AlpA.
 
  
 0.734
AEB85050.1
KEGG: dze:Dd1591_3709 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory.
 
  
 0.629
AEB82852.1
Prophage CP4-57 regulatory; KEGG: drt:Dret_1611 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory.
 
  
 0.557
AEB85354.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; Belongs to the 'phage' integrase family.
 
   
 0.469
AEB84011.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; Belongs to the 'phage' integrase family.
 
   
 0.424
AEB84338.1
Transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted.
 
     0.400
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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