Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84242.1MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD. (484 aa)    
Predicted Functional Partners:
AEB83901.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C6759 MmgE/PrpD.
  
     0.774
AEB86236.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein.
  
     0.774
AEB84240.1
Alpha-methylacyl-CoA racemase; Manually curated; KEGG: mau:Micau_2811 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
    0.741
AEB84232.1
KEGG: bbr:BB4339 hypothetical protein.
  
     0.738
AEB84241.1
KEGG: rpa:RPA4552 4-hydroxybutyrate-CoA transferase/hydrolase.
       0.718
AEB84239.1
PFAM: Alpha/beta hydrolase fold-1; KEGG: pla:Plav_2055 alpha/beta hydrolase fold.
 
     0.700
AEB84243.1
KEGG: bbr:BB3950 hypothetical protein.
       0.670
AEB84246.1
PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7491 MaoC-like dehydratase.
 
     0.558
AEB84244.1
Formyl-CoA transferase; KEGG: bbr:BB4584 hypothetical protein; PFAM: CoA-transferase family III.
  
    0.551
AEB83917.1
KEGG: bbr:BB0622 hypothetical protein.
 
  
 0.549
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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