STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84261.1PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein. (127 aa)    
Predicted Functional Partners:
AEB84262.1
SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger.
 
 
 0.980
AEB84135.1
SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger.
 
 
 0.968
AEB84134.1
PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein.
  
  
 
0.900
AEB86928.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
     
  0.900
AEB84128.1
Integrating conjugative element, PFGI-1, ParB; KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB.
 
   
 0.800
AEB84147.1
SMART: DEAD-like helicase, N-terminal; KEGG: tmz:Tmz1t_0972 DEAD-like helicase.
 
 
 
 0.798
AEB84283.1
SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase.
 
 
 
 0.798
AEB84130.1
KEGG: mpt:Mpe_A2336 hypothetical protein.
 
   
 0.794
AEB84132.1
KEGG: mpt:Mpe_A2339 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4669; PFAM: Integrating conjugative element protein, PFL4669.
 
   
 0.794
AEB84129.1
KEGG: mpt:Mpe_A2335 hypothetical protein.
 
     0.790
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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