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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84275.1KEGG: rpf:Rpic12D_0662 hypothetical protein. (184 aa)    
Predicted Functional Partners:
AEB84164.1
TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: tmz:Tmz1t_0968 hypothetical protein.
 
     0.782
AEB84284.1
TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: rpf:Rpic12D_0668 hypothetical protein.
 
     0.782
AEB84170.1
TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: mpt:Mpe_A2381 hypothetical protein.
 
     0.781
AEB84290.1
TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: rpf:Rpic12D_0674 hypothetical protein.
 
     0.781
AEB84166.1
TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: ajs:Ajs_2211 putative secreted protein.
 
     0.780
AEB84168.1
TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein.
 
     0.780
AEB84286.1
TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein.
 
     0.780
AEB84288.1
TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: rpf:Rpic12D_0672 hypothetical protein.
 
     0.780
AEB84128.1
Integrating conjugative element, PFGI-1, ParB; KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB.
 
     0.779
AEB84132.1
KEGG: mpt:Mpe_A2339 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4669; PFAM: Integrating conjugative element protein, PFL4669.
 
     0.779
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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