STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84282.1KEGG: tmz:Tmz1t_0973 hypothetical protein. (101 aa)    
Predicted Functional Partners:
AEB84281.1
KEGG: rpf:Rpic12D_0666 hypothetical protein.
 
     0.872
AEB84283.1
SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase.
 
     0.838
AEB84145.1
KEGG: tmz:Tmz1t_0974 hypothetical protein.
 
     0.748
AEB84147.1
SMART: DEAD-like helicase, N-terminal; KEGG: tmz:Tmz1t_0972 DEAD-like helicase.
 
     0.687
AEB84130.1
KEGG: mpt:Mpe_A2336 hypothetical protein.
  
     0.674
AEB84129.1
KEGG: mpt:Mpe_A2335 hypothetical protein.
  
     0.672
AEB84286.1
TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein.
 
     0.648
AEB84134.1
PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein.
  
     0.643
AEB84261.1
PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein.
  
     0.638
AEB84128.1
Integrating conjugative element, PFGI-1, ParB; KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB.
  
     0.637
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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