STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84298.1TIGRFAM: Conjugative transfer region lipoprotein; KEGG: rpf:Rpic12D_0682 hypothetical protein. (144 aa)    
Predicted Functional Partners:
AEB84295.1
Integrating conjugative element protein, PFL_4703 family; TIGRFAM: Protein of unknown function DUF2895; KEGG: rpf:Rpic12D_0679 hypothetical protein.
 
     0.951
AEB84296.1
TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: rpf:Rpic12D_0680 hypothetical protein.
 
     0.951
AEB84297.1
TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: rpf:Rpic12D_0681 hypothetical protein.
 
     0.951
AEB84299.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein.
 
     0.951
AEB84293.1
Integrating conjugative element membrane protein, PFL_4702 family; TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: rpf:Rpic12D_0677 hypothetical protein.
 
     0.945
AEB84300.1
PFAM: DSBA-like thioredoxin domain; KEGG: rpf:Rpic12D_0684 DsbA oxidoreductase.
 
     0.941
AEB84291.1
Protein of unknown function, RAQPRD; KEGG: rpf:Rpic12D_0675 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD.
 
     0.928
AEB84290.1
TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: rpf:Rpic12D_0674 hypothetical protein.
 
     0.877
AEB84289.1
TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; KEGG: rpf:Rpic12D_0673 hypothetical protein.
 
     0.875
AEB84286.1
TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein.
 
     0.870
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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