STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84301.1KEGG: net:Neut_0078 hypothetical protein. (195 aa)    
Predicted Functional Partners:
AEB86963.1
KEGG: dia:Dtpsy_3434 hypothetical protein.
  
     0.629
AEB86964.1
KEGG: ajs:Ajs_4087 hypothetical protein.
  
     0.623
AEB86965.1
PFAM: Oxidoreductase FAD/NAD(P)-binding; Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase, FAD-binding domain; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit.
  
     0.539
AEB83983.1
PFAM: Replication initiator protein A; KEGG: dia:Dtpsy_3526 putative replication initiator and transcription repressor protein.
  
     0.461
AEB84547.1
PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein.
  
     0.459
AEB84302.1
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: maq:Maqu_1250 TetR family transcriptional regulator.
       0.458
AEB84303.1
KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.458
AEB84304.1
PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ppd:Ppro_3850 hypothetical protein.
       0.458
AEB84305.1
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: ppd:Ppro_3849 ABC transporter related; SMART: ATPase, AAA+ type, core.
       0.458
AEB85317.1
PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein.
  
     0.454
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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