Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB84309.1TniB family protein; KEGG: bxe:Bxe_C1174 transposition protein TniB; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core. (302 aa)    
Predicted Functional Partners:
AEB84308.1
PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bxe:Bxe_C1173 integrase TniA.
 
   
 0.962
AEB84310.1
TniQ family protein; KEGG: bxe:Bxe_C1175 transposition protein TniQ; manually curated; PFAM: TniQ.
   
 
 0.847
AEB84322.1
Resolvase domain protein; KEGG: bxe:Bxe_C1209 putative resolvase; PFAM: Resolvase, N-terminal; Protein of unknown function DUF932; SMART: Resolvase, N-terminal.
 
   
 0.695
AEB86787.1
Lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; KEGG: ajs:Ajs_3937 lipase.
  
     0.498
AEB84303.1
KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
   0.472
AEB84306.1
KEGG: ppd:Ppro_3848 hypothetical protein.
       0.468
AEB84307.1
KEGG: maq:Maqu_1255 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
       0.468
AEB84304.1
PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ppd:Ppro_3850 hypothetical protein.
  
    0.448
AEB84311.1
KEGG: shn:Shewana3_1247 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02391; PFAM: Conserved hypothetical protein CHP02391.
       0.428
AEB84302.1
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: maq:Maqu_1250 TetR family transcriptional regulator.
       0.419
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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