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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84322.1Resolvase domain protein; KEGG: bxe:Bxe_C1209 putative resolvase; PFAM: Resolvase, N-terminal; Protein of unknown function DUF932; SMART: Resolvase, N-terminal. (197 aa)    
Predicted Functional Partners:
AEB84308.1
PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bxe:Bxe_C1173 integrase TniA.
 
   
 0.705
AEB84309.1
TniB family protein; KEGG: bxe:Bxe_C1174 transposition protein TniB; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core.
 
   
 0.693
AEB85353.1
PFAM: Protein of unknown function DUF1016; KEGG: pau:PA14_31270 hypothetical protein.
 
   
 0.421
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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