Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB84333.1TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: rpf:Rpic12D_0688 hypothetical protein. (466 aa)    
Predicted Functional Partners:
AEB84332.1
KEGG: rpf:Rpic12D_0687 protein of unknown function DUF1527; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710.
 
     0.946
AEB84335.1
KEGG: rpf:Rpic12D_0690 hypothetical protein.
 
     0.933
AEB84187.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein.
 
 
   0.802
AEB84299.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein.
 
 
   0.802
AEB84201.1
KEGG: ajs:Ajs_2175 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal.
 
    0.792
AEB84339.1
KEGG: rpf:Rpic12D_0694 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal.
 
    0.792
AEB84194.1
KEGG: eba:ebA2511 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710.
 
     0.790
AEB84197.1
KEGG: ajs:Ajs_2179 hypothetical protein.
 
     0.790
AEB84166.1
TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: ajs:Ajs_2211 putative secreted protein.
 
     0.783
AEB84168.1
TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein.
 
     0.783
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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