Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84337.1KEGG: dac:Daci_4188 hypothetical protein. (154 aa)    
Predicted Functional Partners:
AEB84338.1
Transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted.
 
  
 0.992
AEB84339.1
KEGG: rpf:Rpic12D_0694 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal.
 
     0.610
AEB84336.1
KEGG: rpf:Rpic12D_0691 hypothetical protein.
       0.543
AEB84199.1
KEGG: mpt:Mpe_A2403 hypothetical protein.
  
     0.484
AEB84122.1
KEGG: tmz:Tmz1t_1007 hypothetical protein.
  
     0.462
AEB84293.1
Integrating conjugative element membrane protein, PFL_4702 family; TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: rpf:Rpic12D_0677 hypothetical protein.
  
     0.449
AEB84112.1
KEGG: tmz:Tmz1t_1021 hypothetical protein.
  
     0.430
AEB84233.1
Regulatory protein IclR; KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.
  
     0.420
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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