STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84338.1Transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted. (105 aa)    
Predicted Functional Partners:
AEB84337.1
KEGG: dac:Daci_4188 hypothetical protein.
 
  
 0.992
AEB84339.1
KEGG: rpf:Rpic12D_0694 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal.
 
     0.665
AEB84293.1
Integrating conjugative element membrane protein, PFL_4702 family; TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: rpf:Rpic12D_0677 hypothetical protein.
  
     0.591
AEB84336.1
KEGG: rpf:Rpic12D_0691 hypothetical protein.
       0.545
AEB84181.1
Integrating conjugative element membrane protein, PFL_4702 family; TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: tmz:Tmz1t_0954 hypothetical protein.
  
     0.538
AEB84288.1
TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: rpf:Rpic12D_0672 hypothetical protein.
  
     0.534
AEB84299.1
TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein.
 
     0.533
AEB84335.1
KEGG: rpf:Rpic12D_0690 hypothetical protein.
  
     0.533
AEB84199.1
KEGG: mpt:Mpe_A2403 hypothetical protein.
  
     0.519
AEB84286.1
TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein.
  
     0.501
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.