Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB84380.1KEGG: nde:NIDE0084 hypothetical protein. (166 aa)    
Predicted Functional Partners:
AEB84381.1
KEGG: dia:Dtpsy_3223 hypothetical protein.
       0.797
AEB84382.1
KEGG: nde:NIDE0086 hypothetical protein.
       0.797
AEB84383.1
TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: dia:Dtpsy_3221 hypothetical protein; SMART: Phage/plasmid primase, P4, C-terminal.
       0.794
AEB84379.1
Domain of unknown function P63C-containing protein; PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein.
     
 0.785
AEB84376.1
KEGG: mms:mma_2689 hypothetical protein.
       0.779
AEB84377.1
KEGG: nde:NIDE0081 hypothetical protein.
       0.779
AEB84378.1
KEGG: dia:Dtpsy_3225 hypothetical protein.
       0.779
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.768
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.760
AEB84375.1
KEGG: mca:MCA2640 hypothetical protein.
  
    0.756
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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