STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84391.1KEGG: dia:Dtpsy_3211 hypothetical protein. (68 aa)    
Predicted Functional Partners:
AEB84390.1
KEGG: mms:mma_2762 hypothetical protein.
 
  
 0.909
AEB84392.1
KEGG: sml:Smlt1874 hypothetical protein.
 
     0.897
AEB84393.1
PFAM: Phage terminase GpA; KEGG: dia:Dtpsy_3209 terminase GpA.
 
     0.886
AEB84397.1
Manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda.
 
     0.871
AEB84389.1
KEGG: mms:mma_2759 hypothetical protein.
 
     0.864
AEB84399.1
KEGG: dia:Dtpsy_3205 hypothetical protein.
 
     0.864
AEB84400.1
KEGG: dia:Dtpsy_3204 hypothetical protein.
 
     0.861
AEB84416.1
KEGG: mms:mma_2786 hypothetical protein.
 
     0.818
AEB84398.1
PFAM: Peptidase S49; KEGG: dia:Dtpsy_3206 peptidase S49.
 
     0.785
AEB84387.1
KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.768
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.