Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB84396.1KEGG: rsl:RPSI07_0240 hypothetical protein. (73 aa)    
Predicted Functional Partners:
AEB84394.1
KEGG: mms:mma_2706 hypothetical protein.
       0.797
AEB84395.1
KEGG: mms:mma_2767 hypothetical protein.
       0.797
AEB84397.1
Manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda.
       0.797
AEB84392.1
KEGG: sml:Smlt1874 hypothetical protein.
       0.710
AEB84393.1
PFAM: Phage terminase GpA; KEGG: dia:Dtpsy_3209 terminase GpA.
       0.710
AEB84399.1
KEGG: dia:Dtpsy_3205 hypothetical protein.
       0.698
AEB84400.1
KEGG: dia:Dtpsy_3204 hypothetical protein.
       0.698
AEB84401.1
KEGG: dia:Dtpsy_3203 hypothetical protein.
       0.698
AEB84402.1
Hypothetical protein; KEGG: dia:Dtpsy_3202 signal peptide protein.
       0.698
AEB84404.1
KEGG: dia:Dtpsy_3200 hypothetical protein.
       0.698
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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