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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84409.1KEGG: dia:Dtpsy_3196 hypothetical protein. (136 aa)    
Predicted Functional Partners:
AEB84410.1
KEGG: dia:Dtpsy_3195 hypothetical protein.
 
     0.952
AEB84408.1
TIGRFAM: Tape measure domain; KEGG: dia:Dtpsy_3197 phage tape measure protein.
 
     0.924
AEB84414.1
KEGG: dia:Dtpsy_3191 hypothetical protein.
 
     0.920
AEB84404.1
KEGG: dia:Dtpsy_3200 hypothetical protein.
 
     0.907
AEB84399.1
KEGG: dia:Dtpsy_3205 hypothetical protein.
 
     0.789
AEB84400.1
KEGG: dia:Dtpsy_3204 hypothetical protein.
 
     0.771
AEB84398.1
PFAM: Peptidase S49; KEGG: dia:Dtpsy_3206 peptidase S49.
 
     0.735
AEB84397.1
Manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda.
 
     0.690
AEB84407.1
KEGG: dia:Dtpsy_3198 hypothetical protein.
       0.669
AEB84405.1
KEGG: dia:Dtpsy_3199 hypothetical protein.
       0.663
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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