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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84418.1PFAM: Glycoside hydrolase, family 24; KEGG: sml:Smlt1851 putative glycosidase. (166 aa)    
Predicted Functional Partners:
AEB84416.1
KEGG: mms:mma_2786 hypothetical protein.
 
     0.822
AEB84419.1
KEGG: nde:NIDE0125 hypothetical protein.
       0.788
AEB84417.1
KEGG: nde:NIDE0123 hypothetical protein.
       0.781
AEB84429.1
PFAM: Glycoside hydrolase, family 24; KEGG: mms:mma_2788 phage-related lysozyme.
  
     0.668
AEB84414.1
KEGG: dia:Dtpsy_3191 hypothetical protein.
 
     0.655
AEB84413.1
KEGG: mca:MCA2675 hypothetical protein.
       0.602
AEB84412.1
KEGG: mca:MCA2674 hypothetical protein.
       0.599
AEB84411.1
KEGG: dia:Dtpsy_3194 hypothetical protein.
       0.598
AEB84399.1
KEGG: dia:Dtpsy_3205 hypothetical protein.
 
    0.595
AEB84397.1
Manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda.
 
   
 0.594
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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