Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB84425.1KEGG: mca:MCA0277 hypothetical protein. (474 aa)    
Predicted Functional Partners:
AEB84426.1
PFAM: DNA methylase, adenine-specific; KEGG: xfn:XfasM23_2177 N-6 DNA methylase.
 
 0.998
AEB84424.1
KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.
 
  
 0.993
AEB84421.1
PFAM: Protein of unknown function DUF511; KEGG: dno:DNO_0218 hypothetical protein.
 
  
 0.964
AEB85127.1
PFAM: DNA methylase, adenine-specific; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit.
 
 
 0.959
AEB84191.1
KEGG: app:CAP2UW1_2946 N-6 DNA methylase.
  
 
 0.955
AEB84427.1
PFAM: Domain of unknown function DUF262; Domain of unknown function DUF1524 RloF; KEGG: gca:Galf_1217 hypothetical protein.
 
   
 0.868
AEB84422.1
KEGG: bav:BAV0365 hypothetical protein.
 
     0.850
AEB84423.1
Hypothetical protein; Manually curated; KEGG: pol:Bpro_1539 hypothetical protein.
       0.795
AEB84428.1
KEGG: vei:Veis_2419 hypothetical protein.
 
     0.786
AEB84173.1
PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod.
 
 
 
 0.643
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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