Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84429.1PFAM: Glycoside hydrolase, family 24; KEGG: mms:mma_2788 phage-related lysozyme. (134 aa)    
Predicted Functional Partners:
AEB84404.1
KEGG: dia:Dtpsy_3200 hypothetical protein.
 
     0.723
AEB84385.1
KEGG: mms:mma_2698 hypothetical protein.
  
     0.705
AEB84421.1
PFAM: Protein of unknown function DUF511; KEGG: dno:DNO_0218 hypothetical protein.
 
     0.676
AEB84418.1
PFAM: Glycoside hydrolase, family 24; KEGG: sml:Smlt1851 putative glycosidase.
  
     0.668
AEB84390.1
KEGG: mms:mma_2762 hypothetical protein.
 
     0.667
AEB84399.1
KEGG: dia:Dtpsy_3205 hypothetical protein.
 
  
 0.666
AEB84389.1
KEGG: mms:mma_2759 hypothetical protein.
  
     0.656
AEB84386.1
KEGG: sml:Smlt1883 hypothetical protein.
  
     0.629
AEB84387.1
KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.623
AEB84427.1
PFAM: Domain of unknown function DUF262; Domain of unknown function DUF1524 RloF; KEGG: gca:Galf_1217 hypothetical protein.
 
 
   0.607
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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