STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB84439.1PFAM: Protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family. (223 aa)    
Predicted Functional Partners:
AEB84441.1
KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like.
 
   
 0.696
AEB84440.1
PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S24 family.
 
   
 0.670
AEB85141.1
Relaxase; PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein.
  
    0.499
AEB85673.1
Relaxase; PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein.
  
    0.495
AEB85116.1
PRTRC system protein D; TIGRFAM: ParB-related, ThiF-related cassette, protein D; KEGG: ajs:Ajs_1600 hypothetical protein.
 
 
   0.418
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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