STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84448.1KEGG: nde:NIDE0076 hypothetical protein. (87 aa)    
Predicted Functional Partners:
AEB84447.1
Helix-turn-helix domain protein; KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
  
 0.809
AEB84444.1
Resolvase domain protein; KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal.
       0.524
AEB84445.1
PFAM: Protein of unknown function DUF2924; KEGG: mca:MCA2635 hypothetical protein.
       0.524
AEB84446.1
KEGG: mca:MCA2636 hypothetical protein.
       0.523
AEB84442.1
KEGG: mca:MCA2632 hypothetical protein.
       0.518
AEB84443.1
KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation.
       0.518
AEB84449.1
PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein.
       0.477
AEB84450.1
PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region.
       0.472
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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